PSI-Search (REST) REST

Provider:
European Bioinformatics Institute (EMBL-EBI)

Location:
UNITED KINGDOM

Submitter/Source:
EMBL-EBI Support (almost 4 years ago)

Base URL:
http://www.ebi.ac.uk/Tools/services/rest/psisearch

Documentation URL(s): EMBL-EBI Support (almost 4 years ago) http://www.ebi.ac.uk/Tools/webservices/services/sss/psisearch_rest Login to add a documentation URL Description(s): EMBL-EBI Support(almost 4 years ago)

Similar to PSI-BLAST, PSI-Search uses SSEARCH to perform a rigorous Smith & Waterman search of a protein database. From the results, the significant hits are used to create a position-specific scoring matrix (PSSM) profile using NCBI blastpgp. The profile

Login to add a description ELIXIR Description(s): Michael Cornell Curator(6 months ago)

Similar to PSI-BLAST, PSI-Search uses SSEARCH to perform a rigorous Smith & Waterman search of a protein database.

Login to add an elixir description License(s): EMBL-EBI Support (almost 4 years ago) Login to add license info Cost: EMBL-EBI Support(almost 4 years ago)

Free.

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E-mail supplied for submission must be a valid e-mail address and no more than 25 concurrent jobs should be submitted at any one time, see http://www.ebi.ac.uk/Tools/webservices/about/webservices and the EMBL-EBI Terms of Use: http://www.ebi.ac.uk/Informa

Login to add usage conditions info Contact info: EMBL-EBI Support (almost 4 years ago) Michael Cornell Curator(6 months ago)

http://www.ebi.ac.uk/support/

Login to add contact info How to cite this service: No info yet Login to add how to cite info Publications about this service: for this service (this can be in a common citation format like Bibtex, MLA or APA, a DOI, a URL, etc.) EMBL-EBI Support(almost 4 years ago)

Goujon M., McWilliam H., Li W., Valentin F., Squizzato S., Paern J. and Lopez R. (2010) “A new bioinformatics analysis tools framework at EMBL-EBI.” Nucleic Acids Res. 38:W695-9 PMID: 20439314 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId

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