Member of BioCatalogue Michael Cornell Curator

Services Annotated (21)

KEGG REST Jp
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PASSED
Enables querying of KEGG databases (pathway, ligand, disease, gene, drug etc). Use general form of URL http://rest.kegg.jp/{operation}/{argument}/{argument2 or option} where operation is one of info, list, find, get, conv, link arguments are databases or database entries Try http://rest.kegg.jp/{operation}/{database}/{term} operation = list, database = pathway and term = hsa

Provider: rest-kegg-jp | Base URL: http://rest.kegg.jp

Allen Brain Atlas Browse REST Us
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The Allen Brain Atlas integrates gene expression data, connectivity data and neuroanatomical information for the adult and developing brain in mouse, human and non-human primate

Provider: Allen Institute for Brain Science | Base URL: http://api.brain-map.org/api/v2/data

PsicquicService SOAP Es
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WARNING
APID (Agile Protein Interaction DataAnalyzer) is an interactive bioinformatic web-tool that has been developed to allow exploration and analysis of main currently known information about protein-protein interactions integrated and unified in a common and comparative platform. The analytical and integrative effort done in APID provides an open access frame where all known experimentally validated protein-protein interactions (BIND, BioGRID, DIP, HPRD, IntAct and MINT) are unified in a unique w...

Provider: cicblade-dep-usal-es | WSDL Location: http://cicblade.dep.usal.es/psicquic-ws/webservices/psicquic?wsdl

PsicquicService SOAP Ca
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The Bio-Analytic Resource contains tools for working with functional genomics and other data, mainly for the Arabadopsis community.

Provider: The Bio-Analytic Resource for Plant Biology | WSDL Location: http://bar.utoronto.ca:9090/psicquic/webservices/psicquic?wsdl

PsicquicService SOAP Us
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BindingDB is a public, web-accessible database of measured binding affinities, focusing chiefly on the interactions of protein considered to be drug-targets with small, drug-like molecules

Provider: PSICQUIC (Binding Database) | WSDL Location: http://catalyst.ucsd.edu:8080/psicquic-ws/webservices/psicquic?wsdl

PsicquicService SOAP Ca
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Prediction biologically relevant protein interactions and cellular network evolution

Provider: webservice-baderlab-org | WSDL Location: http://webservice.baderlab.org:8480/psicquic-ws/webservices/psicquic?wsdl

PsicquicService SOAP
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BioGRID is an online interaction repository with data compiled through comprehensive curation efforts

Provider: tyersrest-tyerslab-com | WSDL Location: http://tyersrest.tyerslab.com:8805/psicquic/webservices/psicquic?wsdl

PsicquicService SOAP Us
WARNING
The DIP database catalogs experimentally determined interactions between proteins. It combines information from a variety of sources to create a single, consistent set of protein-protein interactions. The data stored within the DIP database were curated, both, manually by expert curators and also automatically using computational approaches that utilize the the knowledge about the protein-protein interaction networks extracted from the most reliable, core subset of the DIP data.

Provider: PSIQUIC (Database of Interacting Proteins) | WSDL Location: http://imex.mbi.ucla.edu/psicquic-ws/webservices/psicquic?wsdl

PsicquicService SOAP Ca
WARNING
GeneMANIA finds other genes that are related to a set of input genes, using a very large set of functional association data. Association data include protein and genetic interactions, pathways, co-expression, co-localization and protein domain similarity. You can use GeneMANIA to find new members of a pathway or complex, find additional genes you may have missed in your screen or find new genes with a specific function, such as protein kinases. Your question is defined by the set of genes you...

Provider: webservice-baderlab-org | WSDL Location: http://webservice.baderlab.org:8380/psi-gm/webservices/psicquic?wsdl

PsicquicService SOAP Gb
PASSED
HPIDB is a host-pathogen protein-protein intteraction (PPI) database, which serves as a unified resource for host-pathogen interactions. HPIDB integrates experimental PPIs from several public databases into a single, non-redundant web accessible resource.

Provider: European Bioinformatics Institute (EMBL-EBI) | WSDL Location: http://www.ebi.ac.uk/Tools/webservices/psicquic/hpidb/webservices/psicquic?wsdl

PsicquicService SOAP Ca
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InteroPorc is an automatic prediction tool to infer protein-protein interaction networks. It is applicable for lots of species using orthology and known interactions. The interoPORC method is based on the interolog concept and combines source interaction datasets from public databases as well as clusters of orthologous proteins (PORC) available on Integr8.

Provider: webservice-baderlab-org | WSDL Location: http://webservice.baderlab.org:8580/psicquic-interoporc-ws/webservices/psicquic?wsdl

PsicquicService SOAP Gb
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I2D integrates known, experimental and predicted PPIs for five model organisms and human. It combines the literature-derived human PPIs from BIND, HPRD and MINT, with predictions made from Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster and Mus musculus.

Provider: European Bioinformatics Institute (EMBL-EBI) | WSDL Location: http://www.ebi.ac.uk/Tools/webservices/psicquic/i2d/webservices/psicquic?wsdl

PsicquicService SOAP Gb
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InnateDB is an integrated analysis platform that has been specifically designed to facilitate systems-level analyses of mammalian innate immunity networks, pathways and genes

Provider: European Bioinformatics Institute (EMBL-EBI) | WSDL Location: http://www.ebi.ac.uk/Tools/webservices/psicquic/innatedb/webservices/psicquic?wsdl

PsicquicService SOAP Ca

This service has been archived because it may not be active anymore (or is close to being non active).

PsicquicService SOAP
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STRING is a database of known and predicted protein interactions. The interactions include direct (physical) and indirect (functional) associations; they are derived from four sources: Genomic Context High-throughput Experiments (Conserved) Coexpression Previous Knowledge

Provider: string-uzh-ch | WSDL Location: http://string.uzh.ch/psicquic/webservices/psicquic?wsdl

PsicquicService SOAP Gb
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PSICQUIC is an effort from the HUPO Proteomics Standard Initiative (HUPO-PSI) to standardise the access to molecular interaction databases programmatically.

Provider: European Bioinformatics Institute (EMBL-EBI) | WSDL Location: http://www.ebi.ac.uk/Tools/webservices/psicquic/bhf-ucl/webservices/psicquic?wsdl

PSICQUIC (BindingDB) REST Us
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WARNING
Search for protein interactions in the Binding Database

Provider: PSICQUIC (Binding Database) | Base URL: http://catalyst.ucsd.edu:8080/psicquic-ws/webservices

PSIQUIC (DIP) REST Us
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The DIP database catalogs experimentally determined interactions between proteins. It combines information from a variety of sources to create a single, consistent set of protein-protein interactions. Search DIP using a protein id.

Provider: PSIQUIC (Database of Interacting Proteins) | Base URL: http://imex.mbi.ucla.edu/psicquic-ws/webservices