Member of BioCatalogue Michael Cornell Curator

PDBJ REST Jp
Categories:
WARNING
Search Protein Data Bank Japan

Provider: pdbj-org | Base URL: http://pdbj.org

EMBOSS Backtranambig REST Gb
PASSED
EMBOSS backtranambig reads a protein sequence and writes the nucleic acid sequence it could have come from. It does this by using nucleotide ambiguity codes that represent all possible codons for each amino acid.

Provider: European Bioinformatics Institute (EMBL-EBI) | Base URL: http://www.ebi.ac.uk/Tools/services/rest/emboss_backtranambig

EMBOSS Backtranseq REST Gb
PASSED
EMBOSS backtranseq reads a protein sequence and writes the nucleic acid sequence it is most likely to have come from.

Provider: European Bioinformatics Institute (EMBL-EBI) | Base URL: http://www.ebi.ac.uk/Tools/services/rest/emboss_backtranseq

EMBOSS Sixpack REST Gb
PASSED
EMBOSS sixpack reads a DNA sequence and outputs the three forward and (optionally) three reverse translations in a visual manner.

Provider: European Bioinformatics Institute (EMBL-EBI) | Base URL: http://www.ebi.ac.uk/Tools/services/rest/emboss_sixpack

EMBOSS Transeq REST Gb
PASSED
EMBOSS transeq translates nucleic acid sequences to their corresponding peptide sequences. It can translate to the three forward and three reverse frames, and output multiple frame translations at once.

Provider: European Bioinformatics Institute (EMBL-EBI) | Base URL: http://www.ebi.ac.uk/Tools/services/rest/emboss_transeq

SAPS REST Gb
PASSED
SAPS (Statistical Analysis of Protein Sequences) evaluates a wide variety of protein sequence properties using statistics.

Provider: European Bioinformatics Institute (EMBL-EBI) | Base URL: http://www.ebi.ac.uk/Tools/services/rest/saps

EMBOSS pepstats REST Gb
PASSED
EMBOSS pepstats calculates statistics for a protein such as molecular weight and isoelectric point.

Provider: European Bioinformatics Institute (EMBL-EBI) | Base URL: http://www.ebi.ac.uk/Tools/services/rest/emboss_pepstats

Readseq REST Gb
PASSED
Readseq reads and converts biosequences between a selection of common biological sequence formats, including EMBL, GenBank and fasta sequence formats.

Provider: European Bioinformatics Institute (EMBL-EBI) | Base URL: http://www.ebi.ac.uk/Tools/services/rest/readseq

EMBOSS seqret REST Gb
Categories:
PASSED
EMBOSS seqret reads and writes (returns) sequences. It is useful for a variety of tasks, including extracting sequences from databases, displaying sequences, reformatting sequences, producing the reverse complement of a sequence, extracting fragments of a sequence, sequence case conversion or any combination of the above functions.

Provider: European Bioinformatics Institute (EMBL-EBI) | Base URL: http://www.ebi.ac.uk/Tools/services/rest/emboss_seqret

MapMi REST Gb
PASSED
MapMi is a tool for mapping and analysis of miRNA sequences. It is designed to locate miRNA precursor sequences in existing genomic sequences (e.g Ensembl and Ensembl Metazoa), using potential mature miRNA sequences as input. After searching the genome for the provided mature sequences, these hits are extended and classified taking into account major structural properties of known miRNA precursors.

Provider: European Bioinformatics Institute (EMBL-EBI) | Base URL: http://www.ebi.ac.uk/Tools/services/rest/mapmi

Infernal cmscan REST Gb
Categories:
PASSED
Infernal cmscan is used to search the CM-format Rfam database.

Provider: European Bioinformatics Institute (EMBL-EBI) | Base URL: http://www.ebi.ac.uk/Tools/services/rest/infernal_cmscan

Wise2DBA REST Gb
PASSED
The Wise2 DNA Block Aligner (DBA) aligns two DNA sequences using the assumption that the sequences share a number of colinear blocks of conservation separated by potentially large and varied lengths of DNA in the two sequences.

Provider: European Bioinformatics Institute (EMBL-EBI) | Base URL: http://www.ebi.ac.uk/Tools/services/rest/wise2dba

PromoterWise REST Gb
PASSED
PromoterWise compares two DNA sequences allowing for inversions and translocations, ideal for promoters.

Provider: European Bioinformatics Institute (EMBL-EBI) | Base URL: http://www.ebi.ac.uk/Tools/services/rest/promoterwise

GeneWise REST Gb
Categories:
PASSED
GeneWise compares a protein sequence to a genomic DNA sequence, allowing for introns and frameshifting errors.

Provider: European Bioinformatics Institute (EMBL-EBI) | Base URL: http://www.ebi.ac.uk/Tools/services/rest/genewise

Clustal Omega REST Gb
PASSED
Clustal Omega is a multiple sequence alignment program for protein sequences.

Provider: European Bioinformatics Institute (EMBL-EBI) | Base URL: http://www.ebi.ac.uk/Tools/services/rest/clustalo

RADAR REST Gb
PASSED
RADAR identifies gapped approximate repeats and complex repeat architectures involving many different types of repeats.

Provider: European Bioinformatics Institute (EMBL-EBI) | Base URL: http://www.ebi.ac.uk/Tools/services/rest/radar

BioModelsWebServicesService SOAP Us
WARNING
BioModels Database is an annotated resource of quantitative models of biomedical interest. Models are carefully curated to verify their correspondence to their source articles. They are also extensively annotated, with (i) terms from controlled vocabularies, such as disease codes and Gene Ontology terms and (ii) links to other data resources, such as sequence or pathway databases. Researchers in the biomedical and life science communities can then search and retrieve models related to a parti...

Provider: biomodels-caltech-edu | WSDL Location: http://biomodels.caltech.edu/services/BioModelsWebServices?wsdl