Member of BioCatalogue Dmitry

Services Annotated (21)

runBlast2gene SOAP Es
Categories:
PASSED
Analysis of genomic regions containing completely or partially duplicated genes: it all high scoring pairwise alignments (HSPs) and provides the disposition of all independent copies along the genomic fragment from a BLAST report.

Provider: Instituto Nacional de Bioinformatica (INB) | WSDL Location: http://www.inab.org/dproxy/inb.bsc.es/runBlast2gene?wsdl

runPhylipKitsch SOAP Es
Categories:
PASSED
Carries out the Fitch-Margoliash and Least-Squares methods, plus a variety of others of the same family, with the assumption that all tip species are contemporaneous, and there is an evolutionary clock.

Provider: Instituto Nacional de Bioinformatica (INB) | WSDL Location: http://www.inab.org/dproxy/inb.bsc.es/runPhylipKitsch?wsdl

runBlat SOAP Es
Categories:
PASSED
BLAT on DNA is designed to quickly find sequences of 95% and greater similarity of length 40 bases or more.

Provider: Instituto Nacional de Bioinformatica (INB) | WSDL Location: http://www.inab.org/dproxy/inb.bsc.es/runBlat?wsdl

runEmbossWaterFromSequences SOAP Es
Categories:
PASSED
Makes a pairwise global alignment using the Needleman-Wunsch global alignment algorithm.

Provider: Instituto Nacional de Bioinformatica (INB) | WSDL Location: http://www.inab.org/dproxy/inb.bsc.es/runEmbossWaterFromSequences?wsdl

runNCBIBlastxXML SOAP Es
Categories:
PASSED
Compares a nucleotide query sequence translated in all reading frames against a protein sequence database and calculates the statistical significance of matches using the Basic Local Alignment Tool (BLAST).

Provider: Instituto Nacional de Bioinformatica (INB) | WSDL Location: http://www.inab.org/dproxy/inb.bsc.es/runNCBIBlastxXML?wsdl

optimizeStructureFromNAMD_Structure SOAP Es
Categories:
PASSED
Run a Simple Molecular Dynamic Simulation (optimization) with Protein-Solvent system (Using Namd program).

Provider: Instituto Nacional de Bioinformatica (INB) | WSDL Location: http://www.inab.org/dproxy/inb.bsc.es/optimizeStructureFromNAMD_Structure?wsdl

getmmCifFileFromPDBID SOAP Es
PASSED
Gets the contents of a file in format mmCIF from PDB given an PDB ID.

Provider: Instituto Nacional de Bioinformatica (INB) | WSDL Location: http://www.inab.org/dproxy/inb.bsc.es/getmmCifFileFromPDBID?wsdl

runNCBITBlastx_2Seqs SOAP Es
Categories:
PASSED
Compares the six-frame translations of a nucleotide query sequence against the six-frame translations of a nucleotide sequence (used as a database) using the Basic Local Alignment Tool (BLAST).

Provider: Instituto Nacional de Bioinformatica (INB) | WSDL Location: http://www.inab.org/dproxy/inb.bsc.es/runNCBITBlastx_2Seqs?wsdl

runEmbossPepwindowFromSequence SOAP Es
Categories:
PASSED
Pepwindow produces a graph of the classic Kyte and Doolittle hydropathy plot of a protein.

Provider: Instituto Nacional de Bioinformatica (INB) | WSDL Location: http://www.inab.org/dproxy/inb.bsc.es/runEmbossPepwindowFromSequence?wsdl

fromFastaToCommentedNASequence SOAP Es
Categories:
PASSED
Converts a sequence in Fasta format into a CommentedNASequence object.

Provider: Instituto Nacional de Bioinformatica (INB) | WSDL Location: http://www.inab.org/dproxy/inb.bsc.es/fromFastaToCommentedNASequence?wsdl

runEmbossEquicktandemFromSequence SOAP Es
Categories:
PASSED
Equicktandem scans a sequence for potential tandem repeats up to a specified size The results can be used to run etandem on the

Provider: Instituto Nacional de Bioinformatica (INB) | WSDL Location: http://www.inab.org/dproxy/inb.bsc.es/runEmbossEquicktandemFromSequence?wsdl

getCodonTableFromEmboss SOAP Es
Categories:
PASSED
This is a utility to retrieve a codon table from EMBOSS data files.

Provider: Instituto Nacional de Bioinformatica (INB) | WSDL Location: http://www.inab.org/dproxy/inb.bsc.es/getCodonTableFromEmboss?wsdl

runEmbossRestrictFromSequence SOAP Es
Categories:
PASSED
Scans a nucleotide sequence for regions with higher than expected frequencies of the dinucleotide CG.

Provider: Instituto Nacional de Bioinformatica (INB) | WSDL Location: http://www.inab.org/dproxy/inb.bsc.es/runEmbossRestrictFromSequence?wsdl

runWUBlastn SOAP Es
Categories:
PASSED
It compares a nucleotide query sequence against a nucleotide sequence database using the Washington University BLAST algorithm.

Provider: Instituto Nacional de Bioinformatica (INB) | WSDL Location: http://www.inab.org/dproxy/inb.bsc.es/runWUBlastn?wsdl