Member of BioCatalogue EMBL-EBI Support

Services Responsible For (57)

WSDbfetch (RPC/encoded SOAP) SOAP Gb

This service has been archived because it may not be active anymore (or is close to being non active).

WSInterProScan SOAP Gb

This service has been archived because it may not be active anymore (or is close to being non active).

WSNCBIBlast SOAP Gb

This service has been archived because it may not be active anymore (or is close to being non active).

WSClustalW2 SOAP Gb

This service has been archived because it may not be active anymore (or is close to being non active).

WSKalign SOAP Gb

This service has been archived because it may not be active anymore (or is close to being non active).

WSMuscle SOAP Gb

This service has been archived because it may not be active anymore (or is close to being non active).

WSTCoffee SOAP Gb

This service has been archived because it may not be active anymore (or is close to being non active).

WSFasta SOAP Gb

This service has been archived because it may not be active anymore (or is close to being non active).

WSDbfetch (REST) REST Gb

This service has been archived because it may not be active anymore (or is close to being non active).

WSWUBlast SOAP Gb

This service has been archived because it may not be active anymore (or is close to being non active).

EB-eye SOAP Gb
WARNING
The system is developed on top of the Apache Lucene project framework, which is an Open-source, high-performance, full-featured text search engine library written entirely in Java. It uses this technology to index EBI databases in various formats (e.g. fl

Provider: European Bioinformatics Institute (EMBL-EBI) | WSDL Location: http://www.ebi.ac.uk/ebisearch/service.ebi?wsdl

FASTA (SOAP) SOAP Gb
PASSED
FASTA (pronounced FAST-Aye) stands for FAST-All, reflecting the fact that it can be used for a fast protein comparison or a fast nucleotide comparison. This program achieves a high level of sensitivity for similarity searching at high speed. This is achieved by performing optimised searches for local alignments using a substitution matrix. The high speed of this program is achieved by using the observed pattern of word hits to identify potential matches before attempting the more time consumi...

Provider: European Bioinformatics Institute (EMBL-EBI) | WSDL Location: http://www.ebi.ac.uk/Tools/services/soap/fasta?wsdl

NCBI BLAST (SOAP) SOAP Gb
PASSED
NCBI BLAST is a sequence similarity search program. The emphasis is to find regions of sequence similarity, which will yield functional and evolutionary clues about the structure and function of the query sequence.

Provider: European Bioinformatics Institute (EMBL-EBI) | WSDL Location: http://www.ebi.ac.uk/Tools/services/soap/ncbiblast?wsdl

WSPhobius SOAP Gb

This service has been archived because it may not be active anymore (or is close to being non active).

WSBlastpgp SOAP Gb

This service has been archived because it may not be active anymore (or is close to being non active).

InterProScan 4.x (REST) REST Gb

This service has been archived because it may not be active anymore (or is close to being non active).

InterProScan 4.x (SOAP) SOAP Gb

This service has been archived because it may not be active anymore (or is close to being non active).

dbfetch REST Gb
Categories:
PASSED
Dbfetch is an acronym for "database fetch". Dbfetch provides an easy way to retrieve entries from various databases available at EMBL-EBI in a consistent manner. It can be used from any browser, via a web-aware scripting tool (e.g. curl, lynx, elinks or w

Provider: European Bioinformatics Institute (EMBL-EBI) | Base URL: http://www.ebi.ac.uk/Tools/dbfetch

PRANK (REST) REST Gb
PASSED
PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences. It's based on a novel algorithm that treats insertions correctly and avoids over-estimation of the number of deletion events. In addition, PRANK borrows ideas from maximum likelihood methods used in phylogenetics and correctly takes into account the evolutionary distances between sequences. Lastly, PRANK allows for defining a potential structure for sequences to be aligned and then, simultaneously wit...

Provider: European Bioinformatics Institute (EMBL-EBI) | Base URL: http://www.ebi.ac.uk/Tools/services/rest/prank

FASTM (REST) REST Gb
PASSED
The FASTA (pronounced FAST-Aye) suite of programs includes three specialist programs for searching databases with a set of sequence fragments, as may be obtained from protein mass spec. or Edman protein sequencing: * FASTF - Compares an ordered peptide mixture, as would be obtained by Edman degradation of a CNBr cleavage of a protein, against a protein database. * FASTM - Compares an ordered set of peptides to a protein sequence database or an ordered set of oligonucleotides to a nucleotide s...

Provider: European Bioinformatics Institute (EMBL-EBI) | Base URL: http://www.ebi.ac.uk/Tools/services/rest/fastm

FASTM (SOAP) SOAP Gb
PASSED
The FASTA (pronounced FAST-Aye) suite of programs includes three specialist programs for searching databases with a set of sequence fragments, as may be obtained from protein mass spec. or Edman protein sequencing: * FASTF - Compares an ordered peptide mixture, as would be obtained by Edman degradation of a CNBr cleavage of a protein, against a protein database. * FASTM - Compares an ordered set of peptides to a protein sequence database or an ordered set of oligonucleotides to a nucleotide...

Provider: European Bioinformatics Institute (EMBL-EBI) | WSDL Location: http://www.ebi.ac.uk/Tools/services/soap/fastm?wsdl