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InterProScan 5 (SOAP) SOAP Gb
PASSED
InterProScan is a tool that combines different protein signature recognition methods into one resource. InterProScan 5 is a reimplementation of the traditional InterProScan 4.x series and adds features such as pathway annotations and signal peptide and transmembrane prediction using Phobius.

Provider: European Bioinformatics Institute (EMBL-EBI) | WSDL Location: http://www.ebi.ac.uk/Tools/services/soap/iprscan5?wsdl

HMMER hmmscan (SOAP) SOAP Gb
PASSED
Scan a database of HMM protein signatures (e.g. Pfam or TreeFam) with a protein sequence.

Provider: European Bioinformatics Institute (EMBL-EBI) | WSDL Location: http://www.ebi.ac.uk/Tools/services/soap/hmmer_hmmscan?wsdl

PROSITE Scan (SOAP) SOAP Gb
PASSED
Scan the PROSITE (http://prosite.expasy.org/) database of protein profiles and patterns with a protein sequence.

Provider: European Bioinformatics Institute (EMBL-EBI) | WSDL Location: http://www.ebi.ac.uk/Tools/services/soap/ps_scan?wsdl

Pratt (SOAP) SOAP Gb
PASSED
Searches for conserved patterns in a set of unaligned protein sequences.

Provider: European Bioinformatics Institute (EMBL-EBI) | WSDL Location: http://www.ebi.ac.uk/Tools/services/soap/pratt?wsdl

FingerPRINTScan (SOAP) SOAP Gb
PASSED
Identify the closest matching sequence motif fingerprints in the PRINTS database (http://www.bioinf.manchester.ac.uk/dbbrowser/PRINTS/) which appear in a protein sequence.

Provider: European Bioinformatics Institute (EMBL-EBI) | WSDL Location: http://www.ebi.ac.uk/Tools/services/soap/fingerprintscan?wsdl

SeqCksum (SOAP) SOAP Gb
Categories:
PASSED
Seqcksum generates checksums for a sequence using a range of checksum/digest methods. These checksums can be used to identify potentially identical sequences by searching the corresponding checksum field in sequence databases such as those available from ENA and UniProt.

Provider: European Bioinformatics Institute (EMBL-EBI) | WSDL Location: http://www.ebi.ac.uk/Tools/services/soap/seqcksum?wsdl

CENSOR (SOAP) SOAP Gb
PASSED
CENSOR screens sequences against a reference collection of sequence repeats, “censors” (masks) homologous portions with masking symbols and generates a report classifying all found repeats. CENSOR supports repeat finding and masking in both nucleotide and protein sequences.

Provider: European Bioinformatics Institute (EMBL-EBI) | WSDL Location: http://www.ebi.ac.uk/Tools/services/soap/censor?wsdl

MaxSprout (SOAP) SOAP Gb
PASSED
Generate protein backbone and side chain co-ordinates from a C(alpha) trace. The backbone is assembled from fragments taken from known structures. Side chain conformations are optimised in rotamer space using a rough potential energy function to avoid clashes.

Provider: European Bioinformatics Institute (EMBL-EBI) | WSDL Location: http://www.ebi.ac.uk/Tools/services/soap/maxsprout?wsdl

SAPS (SOAP) SOAP Gb
PASSED
SAPS (Statistical Analysis of Protein Sequences) evaluates a wide variety of protein sequence properties using statistics.

Provider: European Bioinformatics Institute (EMBL-EBI) | WSDL Location: http://www.ebi.ac.uk/Tools/services/soap/saps?wsdl

EMBOSS pepstats (SOAP) SOAP Gb
PASSED
EMBOSS pepstats calculates statistics for a protein such as molecular weight and isoelectric point.

Provider: European Bioinformatics Institute (EMBL-EBI) | WSDL Location: http://www.ebi.ac.uk/Tools/services/soap/emboss_pepstats?wsdl

EMBOSS pepinfo (SOAP) SOAP Gb
PASSED
EMBOSS pepinfo creates a variety of plots that display different amino acid properties, such as hydropathy or charged residues, and their position.

Provider: European Bioinformatics Institute (EMBL-EBI) | WSDL Location: http://www.ebi.ac.uk/Tools/services/soap/emboss_pepinfo?wsdl

Readseq (SOAP) SOAP Gb
PASSED
Readseq reads and converts biosequences between a selection of common biological sequence formats, including EMBL, GenBank and fasta sequence formats.

Provider: European Bioinformatics Institute (EMBL-EBI) | WSDL Location: http://www.ebi.ac.uk/Tools/services/soap/readseq?wsdl

EMBOSS seqret (SOAP) SOAP Gb
Categories:
PASSED
EMBOSS seqret reads and writes (returns) sequences. It is useful for a variety of tasks, including extracting sequences from databases, displaying sequences, reformatting sequences, producing the reverse complement of a sequence, extracting fragments of a sequence, sequence case conversion or any combination of the above functions.

Provider: European Bioinformatics Institute (EMBL-EBI) | WSDL Location: http://www.ebi.ac.uk/Tools/services/soap/emboss_seqret?wsdl

Wise2DBA (SOAP) SOAP Gb
PASSED
The Wise2 DNA Block Aligner (DBA) aligns two DNA sequences using the assumption that the sequences share a number of colinear blocks of conservation separated by potentially large and varied lengths of DNA in the two sequences.

Provider: European Bioinformatics Institute (EMBL-EBI) | WSDL Location: http://www.ebi.ac.uk/Tools/services/soap/wise2dba?wsdl

PromoterWise (SOAP) SOAP Gb
PASSED
PromoterWise compares two DNA sequences allowing for inversions and translocations, ideal for promoters.

Provider: European Bioinformatics Institute (EMBL-EBI) | WSDL Location: http://www.ebi.ac.uk/Tools/services/soap/promoterwise?wsdl

GeneWise (SOAP) SOAP Gb
PASSED
GeneWise compares a protein sequence to a genomic DNA sequence, allowing for introns and frameshifting errors.

Provider: European Bioinformatics Institute (EMBL-EBI) | WSDL Location: http://www.ebi.ac.uk/Tools/services/soap/genewise?wsdl

RADAR (SOAP) SOAP Gb
PASSED
RADAR identifies gapped approximate repeats and complex repeat architectures involving many different types of repeats.

Provider: European Bioinformatics Institute (EMBL-EBI) | WSDL Location: http://www.ebi.ac.uk/Tools/services/soap/radar?wsdl

EMBOSS backtranambig (SOAP) SOAP Gb
Categories:
PASSED
EMBOSS Backtranambig reads a protein sequence and writes the nucleic acid sequence it could have come from. It does this by using nucleotide ambiguity codes that represent all possible codons for each amino acid.

Provider: European Bioinformatics Institute (EMBL-EBI) | WSDL Location: http://www.ebi.ac.uk/Tools/services/soap/emboss_backtranambig?wsdl

EMBOSS backtranseq (SOAP) SOAP Gb
Categories:
PASSED
EMBOSS Backtranseq reads a protein sequence and writes the nucleic acid sequence it is most likely to have come from.

Provider: European Bioinformatics Institute (EMBL-EBI) | WSDL Location: http://www.ebi.ac.uk/Tools/services/soap/emboss_backtranseq?wsdl