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phosphoELMdb

1573 1 phosphoELMdb SOAP

aka phosphoELMdb Add_annotation_inactive

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Overview

Provider:
EMBL Nucleotide Sequence Database (Hiedelberg)

Location:
Heidelberg, Germany

Submitter / Source:
SeekDa (over 4 years ago)

Base URL:
http://luna.embl.de:8080/axis2/services/phosphoELMdb

WSDL Location:
http://phospho.elm.eu.org/webservice/phosphoELMdb.wsdl (download last cached WSDL file)

Documentation URL(s):

None

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Description(s):

from

header=[] body=[Provider's description doc] cssheader=[boxoverTooltipHeader] cssbody=[boxoverTooltipBody] delay=[200]

provider's description doc (over 3 years ago)

This WSDL file describe the phospho.ELM database Web Service. The phospho.ELM database contains descriptions of sets of one or more orthologous proteins that are annotated to be phosphorylated.
The orthology grouping allows convenient cross-species comparison.

Reference:

Phospho.ELM: a database of phosphorylation sites--update 2008.
Diella, F., Gould, C.M., Chica, C., Via, A. and Gibson, T.J.
Nucleic Acids Res. 2008 Jan; 36(Database issue):D240-4. Epub 2007 Oct 25

URL:http://phospho.elm.eu.org

by

header=[] body=[Registry] cssheader=[boxoverTooltipHeader] cssbody=[boxoverTooltipBody] delay=[200]

The EMBRACE Registry (over 3 years ago)

The phospho.ELM database contains descriptions of sets of one or more orthologous eukaryotic proteins that are annotated to be phosphorylated.
The orthology grouping allows convenient cross-species comparison.

The web-service provides the following meth

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Usage Conditions: Info

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Info Members Responsible for this Service (0)

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Tags (6)

Info Favourited By (1)

niallhaslam

Info Similar Services (100)

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SOAP Operations (14)

These are the SOAP operations available for the SOAP variant of this service. Click on each one to get more information and to annotate.

Quick Browse | getBindingDomainList | getInstanceByIdentifier | getInstancesByBindingDomainTextSearch | getInstancesByKinaseTextSearch | getInstancesByProteinSequenceAccessionSearchForAllRelatedSpeciesWithAllThroughputData | getInstancesByProteinSequenceAccessionSearchForAllRelatedSpeciesWithLowThroughputDataOnly | getInstancesByProteinSequenceAccessionSearchWithAllThroughputData | getInstancesByProteinSequenceAccessionSearchWithLowThroughputDataOnly | getInstancesByPubMedId | getInstancesWithPdbEntryAssigned | getKinaseList | getSubstrateByIdentifier | getSubstratesByGeneNameSearch | getSubstratesByNameSearch |

getBindingDomainList

1 input | 1 output

Part of Service: phosphoELMdb

Retrieves all binding domains present in the database.

Tags on this SOAP Operation:

none

getInstanceByIdentifier

1 input | 1 output

Part of Service: phosphoELMdb

Retrieves an Instance by its identifier

Tags on this SOAP Operation:

none

getInstancesByBindingDomainTextSearch

1 input | 1 output

Part of Service: phosphoELMdb

Retrieves a list of instances by specified binding domain(exact match only)

Tags on this SOAP Operation:

none

getInstancesByKinaseTextSearch

1 input | 1 output

Part of Service: phosphoELMdb

Retrieves a list of instances by specified kinase(exact match only)

Tags on this SOAP Operation:

none

getInstancesByProteinSequenceAccessionSearchForAllRelatedSpeciesWithAllThroughputData

1 input | 1 output

Part of Service: phosphoELMdb

Retrieves a list of instances by specified protein sequence accession nr for all related species for all types of throughput data

Tags on this SOAP Operation:

none

getInstancesByProteinSequenceAccessionSearchForAllRelatedSpeciesWithLowThroughputDataOnly

1 input | 1 output

Part of Service: phosphoELMdb

Retrieves a list of instances by specified protein sequence accession nr for all related species for low throughput data only

Tags on this SOAP Operation:

none

getInstancesByProteinSequenceAccessionSearchWithAllThroughputData

1 input | 1 output

Part of Service: phosphoELMdb

Retrieves a list of instances by specified protein sequence accession nr for all types of throughput data

Tags on this SOAP Operation:

none

getInstancesByProteinSequenceAccessionSearchWithLowThroughputDataOnly

1 input | 1 output

Part of Service: phosphoELMdb

Retrieves a list of instances by specified protein sequence accession nr for low throughput data only

Tags on this SOAP Operation:

none

getInstancesByPubMedId

1 input | 1 output

Part of Service: phosphoELMdb

Retrieves a list of instances by specified PubMed id

Tags on this SOAP Operation:

none

getInstancesWithPdbEntryAssigned

1 input | 1 output

Part of Service: phosphoELMdb

Retrieves a list of instances with a Pdb entry assigned to them

Tags on this SOAP Operation:

none

1 input | 1 output

Part of Service: phosphoELMdb

Retrieves all kinases present in the database.

Tags on this SOAP Operation:

none

getSubstrateByIdentifier

1 input | 1 output

Part of Service: phosphoELMdb

Retrieves a Substrate by its identifier

Tags on this SOAP Operation:

none

getSubstratesByGeneNameSearch

1 input | 1 output

Part of Service: phosphoELMdb

Retrieves a list of substrates matching the specified gene name.

Tags on this SOAP Operation:

none

getSubstratesByNameSearch

1 input | 1 output

Part of Service: phosphoELMdb

Retrieves a list of substrates matching the specified substrate name.

Tags on this SOAP Operation:

none

Archived Operations (0)

Examples

Monitoring

History

Info Updates from WSDL

WSDL Location: http://phospho.elm.eu.org/webservice/phosphoELMdb.wsdl

Over 3 years ago 73 updates

The description of the SOAP service has been updated
The namespace of the SOAP service has been updated from '' to 'http://phospho.elm.eu.org/phosphoELMdb'.
A new port called 'phosphoELMdb' was found.
The parent port for the operation 'getKinaseList' has been updated to 'phosphoELMdb'.
A new input called 'parameters' for operation 'getKinaseList' was found.
The input 'getKinaseList' for the operation 'getKinaseList' has been removed from the WSDL (and thus archived in the BioCatalogue).
A new output called 'parameters' for operation 'getKinaseList' was found.
The output 'getKinaseListResponse' for the operation 'getKinaseList' has been removed from the WSDL (and thus archived in the BioCatalogue).
The parent port for the operation 'getBindingDomainList' has been updated to 'phosphoELMdb'.
A new input called 'parameters' for operation 'getBindingDomainList' was found.
The input 'getBindingDomainList' for the operation 'getBindingDomainList' has been removed from the WSDL (and thus archived in the BioCatalogue).
A new output called 'parameters' for operation 'getBindingDomainList' was found.
The output 'getBindingDomainListResponse' for the operation 'getBindingDomainList' has been removed from the WSDL (and thus archived in the BioCatalogue).
The parent port for the operation 'getSubstratesByNameSearch' has been updated to 'phosphoELMdb'.
A new input called 'parameters' for operation 'getSubstratesByNameSearch' was found.
The input 'getSubstratesByNameSearch' for the operation 'getSubstratesByNameSearch' has been removed from the WSDL (and thus archived in the BioCatalogue).
A new output called 'parameters' for operation 'getSubstratesByNameSearch' was found.
The output 'getSubstratesByNameSearchResponse' for the operation 'getSubstratesByNameSearch' has been removed from the WSDL (and thus archived in the BioCatalogue).
The parent port for the operation 'getSubstratesByGeneNameSearch' has been updated to 'phosphoELMdb'.
A new input called 'parameters' for operation 'getSubstratesByGeneNameSearch' was found.
The input 'getSubstratesByGeneNameSearch' for the operation 'getSubstratesByGeneNameSearch' has been removed from the WSDL (and thus archived in the BioCatalogue).
A new output called 'parameters' for operation 'getSubstratesByGeneNameSearch' was found.
The output 'getSubstratesByGeneNameSearchResponse' for the operation 'getSubstratesByGeneNameSearch' has been removed from the WSDL (and thus archived in the BioCatalogue).
The parent port for the operation 'getInstancesByProteinSequenceAccessionSearchWithAllThroughputData' has been updated to 'phosphoELMdb'.
A new input called 'parameters' for operation 'getInstancesByProteinSequenceAccessionSearchWithAllThroughputData' was found.
The input 'getInstancesByProteinSequenceAccessionSearchWithAllThroughputData' for the operation 'getInstancesByProteinSequenceAccessionSearchWithAllThroughputData' has been removed from the WSDL (and thus archived in the BioCatalogue).
A new output called 'parameters' for operation 'getInstancesByProteinSequenceAccessionSearchWithAllThroughputData' was found.
The output 'getInstancesByProteinSequenceAccessionSearchWithAllThroughputDataResponse' for the operation 'getInstancesByProteinSequenceAccessionSearchWithAllThroughputData' has been removed from the WSDL (and thus archived in the BioCatalogue).
The parent port for the operation 'getInstancesByProteinSequenceAccessionSearchWithLowThroughputDataOnly' has been updated to 'phosphoELMdb'.
A new input called 'parameters' for operation 'getInstancesByProteinSequenceAccessionSearchWithLowThroughputDataOnly' was found.
The input 'getInstancesByProteinSequenceAccessionSearchWithLowThroughputDataOnly' for the operation 'getInstancesByProteinSequenceAccessionSearchWithLowThroughputDataOnly' has been removed from the WSDL (and thus archived in the BioCatalogue).
A new output called 'parameters' for operation 'getInstancesByProteinSequenceAccessionSearchWithLowThroughputDataOnly' was found.
The output 'getInstancesByProteinSequenceAccessionSearchWithLowThroughputDataOnlyResponse' for the operation 'getInstancesByProteinSequenceAccessionSearchWithLowThroughputDataOnly' has been removed from the WSDL (and thus archived in the BioCatalogue).
The parent port for the operation 'getInstancesByProteinSequenceAccessionSearchForAllRelatedSpeciesWithAllThroughputData' has been updated to 'phosphoELMdb'.
A new input called 'parameters' for operation 'getInstancesByProteinSequenceAccessionSearchForAllRelatedSpeciesWithAllThroughputData' was found.
The input 'getInstancesByProteinSequenceAccessionSearchForAllRelatedSpeciesWithAllThroughputData' for the operation 'getInstancesByProteinSequenceAccessionSearchForAllRelatedSpeciesWithAllThroughputData' has been removed from the WSDL (and thus archived in the BioCatalogue).
A new output called 'parameters' for operation 'getInstancesByProteinSequenceAccessionSearchForAllRelatedSpeciesWithAllThroughputData' was found.
The output 'getInstancesByProteinSequenceAccessionSearchForAllRelatedSpeciesWithAllThroughputDataResponse' for the operation 'getInstancesByProteinSequenceAccessionSearchForAllRelatedSpeciesWithAllThroughputData' has been removed from the WSDL (and thus archived in the BioCatalogue).
The parent port for the operation 'getInstancesByProteinSequenceAccessionSearchForAllRelatedSpeciesWithLowThroughputDataOnly' has been updated to 'phosphoELMdb'.
A new input called 'parameters' for operation 'getInstancesByProteinSequenceAccessionSearchForAllRelatedSpeciesWithLowThroughputDataOnly' was found.
The input 'getInstancesByProteinSequenceAccessionSearchForAllRelatedSpeciesWithLowThroughputDataOnly' for the operation 'getInstancesByProteinSequenceAccessionSearchForAllRelatedSpeciesWithLowThroughputDataOnly' has been removed from the WSDL (and thus archived in the BioCatalogue).
A new output called 'parameters' for operation 'getInstancesByProteinSequenceAccessionSearchForAllRelatedSpeciesWithLowThroughputDataOnly' was found.
The output 'getInstancesByProteinSequenceAccessionSearchForAllRelatedSpeciesWithLowThroughputDataOnlyResponse' for the operation 'getInstancesByProteinSequenceAccessionSearchForAllRelatedSpeciesWithLowThroughputDataOnly' has been removed from the WSDL (and thus archived in the BioCatalogue).
The parent port for the operation 'getInstancesByKinaseTextSearch' has been updated to 'phosphoELMdb'.
A new input called 'parameters' for operation 'getInstancesByKinaseTextSearch' was found.
The input 'getInstancesByKinaseTextSearch' for the operation 'getInstancesByKinaseTextSearch' has been removed from the WSDL (and thus archived in the BioCatalogue).
A new output called 'parameters' for operation 'getInstancesByKinaseTextSearch' was found.
The output 'getInstancesByKinaseTextSearchResponse' for the operation 'getInstancesByKinaseTextSearch' has been removed from the WSDL (and thus archived in the BioCatalogue).
The parent port for the operation 'getInstancesByBindingDomainTextSearch' has been updated to 'phosphoELMdb'.
A new input called 'parameters' for operation 'getInstancesByBindingDomainTextSearch' was found.
The input 'getInstancesByBindingDomainTextSearch' for the operation 'getInstancesByBindingDomainTextSearch' has been removed from the WSDL (and thus archived in the BioCatalogue).
A new output called 'parameters' for operation 'getInstancesByBindingDomainTextSearch' was found.
The output 'getInstancesByBindingDomainTextSearchResponse' for the operation 'getInstancesByBindingDomainTextSearch' has been removed from the WSDL (and thus archived in the BioCatalogue).
The parent port for the operation 'getSubstrateByIdentifier' has been updated to 'phosphoELMdb'.
A new input called 'parameters' for operation 'getSubstrateByIdentifier' was found.
The input 'getSubstrateByIdentifier' for the operation 'getSubstrateByIdentifier' has been removed from the WSDL (and thus archived in the BioCatalogue).
A new output called 'parameters' for operation 'getSubstrateByIdentifier' was found.
The output 'getSubstrateByIdentifierResponse' for the operation 'getSubstrateByIdentifier' has been removed from the WSDL (and thus archived in the BioCatalogue).
The parent port for the operation 'getInstanceByIdentifier' has been updated to 'phosphoELMdb'.
A new input called 'parameter' for operation 'getInstanceByIdentifier' was found.
The input 'getInstanceByIdentifier' for the operation 'getInstanceByIdentifier' has been removed from the WSDL (and thus archived in the BioCatalogue).
A new output called 'parameter' for operation 'getInstanceByIdentifier' was found.
The output 'getInstanceByIdentifierResponse' for the operation 'getInstanceByIdentifier' has been removed from the WSDL (and thus archived in the BioCatalogue).
The parent port for the operation 'getInstancesWithPdbEntryAssigned' has been updated to 'phosphoELMdb'.
A new input called 'parameter' for operation 'getInstancesWithPdbEntryAssigned' was found.
The input 'getInstancesWithPdbEntryAssigned' for the operation 'getInstancesWithPdbEntryAssigned' has been removed from the WSDL (and thus archived in the BioCatalogue).
A new output called 'parameter' for operation 'getInstancesWithPdbEntryAssigned' was found.
The output 'getInstancesWithPdbEntryAssignedResponse' for the operation 'getInstancesWithPdbEntryAssigned' has been removed from the WSDL (and thus archived in the BioCatalogue).
The parent port for the operation 'getInstancesByPubMedId' has been updated to 'phosphoELMdb'.
A new input called 'parameter' for operation 'getInstancesByPubMedId' was found.
The input 'getInstancesByPubMedId' for the operation 'getInstancesByPubMedId' has been removed from the WSDL (and thus archived in the BioCatalogue).
A new output called 'parameter' for operation 'getInstancesByPubMedId' was found.
The output 'getInstancesByPubMedIdResponse' for the operation 'getInstancesByPubMedId' has been removed from the WSDL (and thus archived in the BioCatalogue).

[ link to these changes ]

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The BioCatalogue project is funded by the BBSRC (BB/F01046X/1, BB/F010540/1)

Copyright (c) 2008 - 2013 The University of Manchester and the European Bioinformatics Institute (EMBL-EBI)

Codebase license: BSD License
Content license: Creative Commons Public Domain License
System version: 1.1.0
API version: 1.2.0b