1700 0 FASTA (SOAP) SOAP

Specified Name (from WSDL): JDispatcherService |

aka fasta aka ggsearch aka glsearch aka fastx aka tfasty aka tfastx aka ssearch aka fasty Add_annotation_inactive

Categories:

Overview

Provider:
European Bioinformatics Institute (EBI)

Location:
United Kingdom

Submitter / Source:
EMBL-EBI Support (over 4 years ago)

Base URL:
http://www.ebi.ac.uk/Tools/services/soap/fasta

WSDL Location:
http://www.ebi.ac.uk/Tools/services/soap/fasta?wsdl (download last cached WSDL file)

Documentation URL(s):

header=[] body=[Member] cssheader=[boxoverTooltipHeader] cssbody=[boxoverTooltipBody] delay=[200]

EMBL-EBI Support (about 1 year ago)

http://www.ebi.ac.uk/Tools/webservices/services/sss/fasta_soap

Yung Long Li (about 1 year ago)

SAWSDL: http://www.purl.org/SemanticallyAnnotated/fasta.sawsdl

Description(s):

EMBL-EBI Support (6 months ago)

FASTA (pronounced FAST-Aye) stands for FAST-All, reflecting the fact that it can be used for a fast protein comparison or a fast nucleotide comparison. This program achieves a high level of sensitivity for similarity searching at high speed. This is achieved by performing optimised searches for local alignments using a substitution matrix. The high speed of this program is achieved by using the observed pattern of word hits to identify potential matches before attempting the more time consuming optimised search. The trade-off between speed and sensitivity is controlled by the ktup parameter, which specifies the size of the word. Increasing the ktup decreases the number of background hits. Not every word hit is investigated but instead initially looks for segment's containing several nearby hits.

License(s): Info

EMBL-EBI Support (about 1 year ago)

EMBL-EBI Terms of Use: http://www.ebi.ac.uk/Information/termsofuse.html

Cost:

EMBL-EBI Support (about 1 year ago)

Free.

Usage Conditions: Info

EMBL-EBI Support (6 months ago)

E-mail supplied for submission must be a valid e-mail address and no more than 25 concurrent jobs should be submitted at any one time, see http://www.ebi.ac.uk/Tools/webservices/about/webservices and the EMBL-EBI Terms of Use: http://www.ebi.ac.uk/Information/termsofuse.html

Contact Info: Info

EMBL-EBI Support (about 1 year ago)

EMBL-EBI Support: http://www.ebi.ac.uk/support/index.php?query=WebServices

Publications: Info

EMBL-EBI Support (6 months ago)

Goujon M., McWilliam H., Li W., Valentin F., Squizzato S., Paern J. and Lopez R. (2010)
"A new bioinformatics analysis tools framework at EMBL-EBI."
Nucleic Acids Res. 38:W695-9
PMID: 20439314 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=20439314&dataSource=MED)
DOI: 10.1093/nar/gkq313 (http://dx.doi.org/10.1093/nar/gkq313)

EMBL-EBI Support (6 months ago)

Pearson W.R. and Lipman D.J. (1988)
"Improved tools for biological sequence comparison."
Proc. Natl. Acad. Sci. U.S.A. 85(8):2444-8.
PMID: 3162770 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=3162770&dataSource=MED)
DOI: 10.1073/pnas.85.8.2444 (http://dx.doi.org/10.1073/pnas.85.8.2444)

Citations: Info

None

Info Members Responsible for this Service (1)

EMBL-EBI Support

Tags (11)

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SOAP Operations (6)

These are the SOAP operations available for the SOAP variant of this service. Click on each one to get more information and to annotate.

getParameterDetails

1 input | 1 output

Part of Service: FASTA (SOAP)

Get some details about a parameter (e.g. name, description, values, etc.)