Search:
Home ServicesServices Submit ServiceRegister a Service ProvidersProviders  
Feed_icon

Views 1540 Favourites 0 Web Service PSI-Search (SOAP) SOAP Gb

Specified Name (from WSDL): JDispatcherService |
aka PSI-Search Add_annotation_inactiveAdd_annotation_inactiveLog in to add alternative_name
PASSED
Annotations: 41 Total number of annotations from the provider's definition / description document. 24 Total number of annotations submitted by members of the BioCatalogue. 17 Total number of annotations sourced from other registries. 0

Overview

Provider:
European Bioinformatics Institute (EBI)

Location:
United Kingdom Gb

Submitter / Source:
Hamish McWilliamGb (over 3 years ago)

Base URL:
http://www.ebi.ac.uk/Tools/services/soap/psisearch

WSDL Location:
http://www.ebi.ac.uk/Tools/services/soap/psisearch?wsdl (download last cached WSDL file)

Description(s):
by EMBL-EBI Support (6 months ago)

PSI-Search combines the Smith-Waterman search algorithm with the PSI-BLAST profile construction strategy to find distantly related protein sequences.

Cost: Info
by EMBL-EBI Support (6 months ago)

Free.

Usage Conditions: Info
by EMBL-EBI Support (6 months ago)

E-mail supplied for submission must be a valid e-mail address and no more than 25 concurrent jobs should be submitted at any one time, see http://www.ebi.ac.uk/Tools/webservices/about/webservices and the EMBL-EBI Terms of Use: http://www.ebi.ac.uk/Information/termsofuse.html

Publications: Info
by EMBL-EBI Support (6 months ago)

Goujon M., McWilliam H., Li W., Valentin F., Squizzato S., Paern J. and Lopez R. (2010)
"A new bioinformatics analysis tools framework at EMBL-EBI."
Nucleic Acids Res. 38:W695-9
PMID: 20439314 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=20439314&dataSource=MED)
DOI: 10.1093/nar/gkq313 (http://dx.doi.org/10.1093/nar/gkq313)

by EMBL-EBI Support (6 months ago)

Li W., McWilliam H., Goujon M., Cowley A., Lopez R. and Pearson W.R. (2012)
"PSI-Search: iterative HOE-reduced profile SSEARCH searching."
Bioinformatics 28(12):1650-1.
PMID: 22539666 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=22539666&dataSource=MED)
DOI: 10.1093/bioinformatics/bts240 (http://dx.doi.org/10.1093/bioinformatics/bts240)

Citations: Info
None

Info Members Responsible for this Service (1)

Info Favourited By (0)

No one

Info Similar Services (100)

Show allExpand

SOAP Operations (6)

These are the SOAP operations available for the SOAP variant of this service. Click on each one to get more information and to annotate.
Quick Browse | getParameterDetails | getParameters | getResult | getResultTypes | getStatus | run |

getParameterDetails

1 input | 1 output

Part of Service: PSI-Search (SOAP)

Get some details about a parameter (e.g. name, description, values, etc.)
Tags on this SOAP Operation:
none

getParameters

1 input | 1 output

Part of Service: PSI-Search (SOAP)

List the names of the parameters available before submission
Tags on this SOAP Operation:
none

getResult

1 input | 1 output

Part of Service: PSI-Search (SOAP)

Get a job result formatted using a particular renderer
Tags on this SOAP Operation:
none

getResultTypes

1 input | 1 output

Part of Service: PSI-Search (SOAP)

Get the list of renderers available to output a job result (i.e. the list of available output types)
Tags on this SOAP Operation:
none

getStatus

1 input | 1 output

Part of Service: PSI-Search (SOAP)

Get the status of a submitted job
Tags on this SOAP Operation:
none

run

1 input | 1 output

Part of Service: PSI-Search (SOAP)

Submit an analysis job
Tags on this SOAP Operation:
none

Back to top

Archived Operations (0) Info


Examples

Monitoring

History

 

Info Updates from WSDL

WSDL Location: http://www.ebi.ac.uk/Tools/services/soap/psisearch?wsdl

Expand Over 3 years ago 1 update