GenOuest

gassst SOAP Fr
WARNING
GASSST finds global alignments of short DNA sequences against large DNA banks. GASSST strong point is its ability to perform fast gapped alignments. It works well for both short and longer reads. It currently has been tested for reads up to 500bp.

Provider: GenOuest | WSDL Location: http://webservices.genouest.org/typedservices/gassst.wsdl

A_Purva SOAP Fr
WARNING
A_purva is a Contact Map Overlap maximization (CMO) solver. Given two protein structures represented by two contact maps, A_purva computes the amino-acid alignment which maximize the number of common contacts.

Provider: GenOuest | WSDL Location: http://webservices.genouest.org/typedservices/apurva.wsdl

phmmer SOAP Fr
WARNING
search a protein sequence against a protein database

Provider: GenOuest | WSDL Location: http://webservices.genouest.org/typedservices/phmmer.wsdl

jackhmmer SOAP Fr
WARNING
iteratively search a protein sequence against a protein database

Provider: GenOuest | WSDL Location: http://webservices.genouest.org/typedservices/jackhmmer.wsdl

hmmstat SOAP Fr
WARNING
display summary statistics for a profile file

Provider: GenOuest | WSDL Location: http://webservices.genouest.org/typedservices/hmmstat.wsdl

hmmsim SOAP Fr
WARNING
collect profile HMM score distributions on random sequences

Provider: GenOuest | WSDL Location: http://webservices.genouest.org/typedservices/hmmsim.wsdl

hmmsearch SOAP Fr
WARNING
search profile(s) against a sequence database

Provider: GenOuest | WSDL Location: http://webservices.genouest.org/typedservices/hmmsearch.wsdl

hmmscan SOAP Fr
WARNING
search sequence(s) against a profile database

Provider: GenOuest | WSDL Location: http://webservices.genouest.org/typedservices/hmmscan.wsdl

hmmfetch SOAP Fr
WARNING
retrieve profile HMM(s) from a file

Provider: GenOuest | WSDL Location: http://webservices.genouest.org/typedservices/hmmfetch.wsdl

hmmemit SOAP Fr
WARNING
sample sequence(s) from a profile HMM

Provider: GenOuest | WSDL Location: http://webservices.genouest.org/typedservices/hmmemit.wsdl

hmmconvert SOAP Fr
WARNING
hmmconvert: convert profile file to a HMMER format

Provider: GenOuest | WSDL Location: http://webservices.genouest.org/typedservices/hmmconvert.wsdl

hmmbuild SOAP Fr
WARNING
hmmbuild: profile HMM construction from multiple sequence alignments

Provider: GenOuest | WSDL Location: http://webservices.genouest.org/typedservices/hmmbuild.wsdl

hmmalign SOAP Fr
WARNING
hmmalign: align sequences to a profile HMM

Provider: GenOuest | WSDL Location: http://webservices.genouest.org/typedservices/hmmalign.wsdl

BioMart SOAP Fr

This service has been archived because it may not be active anymore (or is close to being non active).

InterProScan SOAP Fr
WARNING
InterProScan usage: iprscan [-appl <name> ...] [-nocrc] [-seqtype p|n] [-trlen <N>] [-trtable <table>] [-iprlookup] [-goterms] -i <seqfile> [-o <output file>] -i <seqfile> Your sequence file (mandatory

Provider: GenOuest | WSDL Location: http://webservices.genouest.org/typedservices/InterProScan.wsdl

Tuiuiu SOAP Fr
Categories:
WARNING
Tuiuiu removes from a sequence or from a set of sequences areas as large as possible that do not contain researched repeats. Tuiuiu is used as a preliminary step before applying a multiple local aligner tool. OPTIONS: --excellent|--good : algorithm

Provider: GenOuest | WSDL Location: http://webservices.genouest.org/typedservices/Tuiuiu.wsdl

Xref SOAP Fr
Categories:
WARNING
With this service you can search for Ensembl genes using external references (GenBank, PDB, ...). You can also get the list of available external references sources for a given species. Finally, you can fetch external references for a given ensembl gene

Provider: GenOuest | WSDL Location: http://webservices.genouest.org/typedservices/Xref.wsdl

DGD SOAP Fr
Categories:
WARNING
The Duplicated Genes Database contains a list a duplicated and co-located genes found in different genomes. This service allows to retrieve co-located similar genes corresponding to each Ensembl gene Id given as input.

Provider: GenOuest | WSDL Location: http://webservices.genouest.org/typedservices/DGD.wsdl

logol SOAP Fr
WARNING
Logol is a language used to describe some patterns in a DNA/RNA/Protein sequence. It focuses on biological meaning patterns to help biologists and bio-informaticians formulate some patterns and create an appropriate model. LogolMatch will then scan a sequ

Provider: GenOuest | WSDL Location: http://webservices.genouest.org/typedservices/logol.wsdl

moduleorganizer SOAP Fr
Categories:
WARNING
ModuleOrganizer is a software package proposing a synthetic view of a set of DNA sequences by providing both a segmentation of them into domains and a classification on the basis of these domains. It indexes the maximal repeats in the sequences and assemb

Provider: GenOuest | WSDL Location: http://webservices.genouest.org/typedservices/moduleorganizer.wsdl