Michael Cornell Curator(over 5 years ago)
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Annotations: 20
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2 Overview
Provider:
University of Wageningen
Location:
Netherlands 
Submitter/Source:
SeekDa
(over 11 years ago)
Base URL:
http://zeus.few.vu.nl/cgi-bin/domaination_srv_ebi.pl
WSDL Location:
http://www.ibi.vu.nl/programs/domainationwww/domaination.wsdl (download last cached WSDL file)
Description(s):
from
provider's description doc
(over 9 years ago)
provider's description doc
(over 9 years ago)
WSDL File for DOMAINATION Domain Prediction. A DOMAINATION run can take 15 to over 90 minutes. The ticket returned should be used in the getResults method. In addition, results can be viewed via the web using this URL: http://www.ibi.vu.nl/programs/domainationwww/?id=ticket getResults returns 0 until results are ready. Discontinuous domains are indicated using hyphens. See http://www.ibi.vu.nl/programs/domainationwww/ for more info. The ticket number returned by getTicketBy* and getResults can also be used for the web server: http://www.ibi.vu.nl/domainationwww/?id=‘ticketnumber’
ELIXIR Description(s):
by Michael Cornell Curator(over 5 years ago)
Michael Cornell Curator(over 5 years ago) DOMAINATION is a method to identify domains in a protein sequence from similarity searches using PSI-BLAST. The identified domains are used in individual PSI-BLAST searches to improve detection of distant homologous sequences. DOMAINATION iterates until no new domains are found.
Contact info:
Example workflows using this service:
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