vrnadistanceService SOAP Soaplab

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Provider:
European Bioinformatics Institute (EMBL-EBI)

Location:
United Kingdom

Submitter/Source:
SoapLab Support (over 11 years ago)

Base URL:
http://www.ebi.ac.uk:80/soaplab/typed/services/nucleic_2d_structure.vrnadistance

WSDL Location:
http://www.ebi.ac.uk/soaplab/typed/services/nucleic_2d_structure.vrnadistance?wsdl(download last cached WSDL file)

Documentation URL(s): None Login to add a documentation URL Description(s): from provider’s description doc (over 10 years ago) RNA distances

Login to add a description ELIXIR Description(s): No info yet Login to add an elixir description Details (from Soaplab server): from Soaplab server(over 10 years ago)

  • ds_lsr_analysis :
    • analysis :
      • name : vrnadistance
      • installation : Soaplab2 default installation
      • type : Nucleic RNA folding, Nucleic 2D structure
      • output :
      • description : RNA distances
      • version : 6.1.0
      • analysis_extension :
      • input :

Show all

  • ds_lsr_analysis :
    • analysis :
      • name : vrnadistance
      • installation : Soaplab2 default installation
      • type : Nucleic RNA folding, Nucleic 2D structure
      • output :
      • description : RNA distances
      • version : 6.1.0
      • analysis_extension :
        • option :
          • name : emboss
          • type : normal
          • value : true
          • name : installation
          • type : normal
          • value : Soaplab2 default installation
          • name : version
          • type : normal
          • value : 6.1.0
        • event :
          • action :
          • id : _E_1
        • app_info :
          • category : nucleic_rna_folding
          • help_url : http://emboss.sourceforge.net/apps/release/6.1/emboss/apps/vrnadistance.html
        • parameter :
          • data :
            • ioformat : unspecified
            • iotype : input
            • repeatable :
          • base :
          • data :
            • result :
            • iotype : output
          • base :
          • choice_list :
            • separator : ,
            • grouptype : zero_or_more
            • base :
              • name : distance_f
              • default : true
              • mandatory : false
              • qualifier : f
              • type : boolean
              • prompt : Full (tree)
              • ordering : 5
              • name : distance_h
              • default : false
              • mandatory : false
              • qualifier : h
              • type : boolean
              • prompt : HIT (tree)
              • ordering : 6
              • name : distance_w
              • default : false
              • mandatory : false
              • qualifier : w
              • type : boolean
              • prompt : Weighted coarse (tree)
              • ordering : 7
              • name : distance_c
              • default : false
              • mandatory : false
              • qualifier : c
              • type : boolean
              • prompt : Coarse (tree)
              • ordering : 8
              • name : distance_F
              • default : false
              • mandatory : false
              • qualifier : F
              • type : boolean
              • prompt : Full (string)
              • ordering : 9
              • name : distance_H
              • default : false
              • mandatory : false
              • qualifier : H
              • type : boolean
              • prompt : HIT (string)
              • ordering : 10
              • name : distance_W
              • default : false
              • mandatory : false
              • qualifier : W
              • type : boolean
              • prompt : Weighted coarse (string)
              • ordering : 11
              • name : distance_C
              • default : false
              • mandatory : false
              • qualifier : C
              • type : boolean
              • prompt : Coarse (string)
              • ordering : 12
              • name : distance_P
              • default : false
              • mandatory : false
              • qualifier : P
              • type : boolean
              • prompt : Base pair distance
              • ordering : 13
          • base :
          • standard :
            • list :
              • name : Comparison type
              • list_item :
                • level : 0
                • shown_as : Pairwise
                • value : p
                • level : 0
                • shown_as : Distance matrix between all structures
                • value : m
                • level : 0
                • shown_as : Compare all structures to the first one
                • value : f
                • level : 0
                • shown_as : Compare continuously
                • value : c
              • type : full
            • repeatable :
          • base :
          • base :
            • name : schapiro
            • default : false
            • mandatory : false
            • qualifier : schapiro
            • prompt : Use cost matrix for comparing coarse structures
            • type : boolean
            • ordering : 15
          • base :
            • name : doalignment
            • default : false
            • mandatory : false
            • qualifier : doalignment
            • prompt : Alignment showing matching substructures
            • type : boolean
            • ordering : 16
      • input :
        • name : distance_f
        • default : true
        • mandatory : false
        • type : boolean
        • name : distance_h
        • default : false
        • mandatory : false
        • type : boolean
        • name : distance_w
        • default : false
        • mandatory : false
        • type : boolean
        • name : distance_c
        • default : false
        • mandatory : false
        • type : boolean
        • name : distance_F
        • default : false
        • mandatory : false
        • type : boolean
        • name : distance_H
        • default : false
        • mandatory : false
        • type : boolean
        • name : distance_W
        • default : false
        • mandatory : false
        • type : boolean
        • name : distance_C
        • default : false
        • mandatory : false
        • type : boolean
        • name : distance_P
        • default : false
        • mandatory : false
        • type : boolean
        • name : schapiro
        • default : false
        • mandatory : false
        • type : boolean
        • name : doalignment
        • default : false
        • mandatory : false
        • type : boolean

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