Web Service FASTA (SOAP) SOAP Gb

Specified Name (from WSDL): JDispatcherService |
aka fasta aka ggsearch aka glsearch aka ssearch aka tfastx aka tfasty aka fastx aka fasty Add_annotation_inactiveAdd_annotation_inactiveLog in to add alternative_name
PASSED
Annotations: 44 Total number of annotations from the provider's definition / description document. 12 Total number of annotations submitted by members of BioCatalogue. 32 Total number of annotations sourced from other registries. 0

Overview

Provider:
Icon  European Bioinformatics Institute (EMBL-EBI)

Location:
United Kingdom Gb

Submitter/Source:
EMBL-EBI SupportGb (almost 6 years ago)

Base URL:
http://www.ebi.ac.uk/Tools/services/soap/fasta

WSDL Location:
http://www.ebi.ac.uk/Tools/services/soap/fasta?wsdl (download last cached WSDL file)

Description(s):
by EMBL-EBI Support (over 2 years ago)

FASTA (pronounced FAST-Aye) stands for FAST-All, reflecting the fact that it can be used for a fast protein comparison or a fast nucleotide comparison. This program achieves a high level of sensitivity for similarity searching at high speed. This is achieved by performing optimised searches for local alignments using a substitution matrix. The high speed of this program is achieved by using the observed pattern of word hits to identify potential matches before attempting the more time consuming optimised search. The trade-off between speed and sensitivity is controlled by the ktup parameter, which specifies the size of the word. Increasing the ktup decreases the number of background hits. Not every word hit is investigated but instead initially looks for segment’s containing several nearby hits.

ELIXIR Description(s): Info
by Michael Cornell Curator(11 days ago)

FASTA can be used for a fast protein comparison or a fast nucleotide comparison.

License(s): Info
by EMBL-EBI Support (over 3 years ago)
Cost: Info
by EMBL-EBI Support (over 3 years ago)

Free.

Usage conditions: Info
by EMBL-EBI Support (over 2 years ago)

E-mail supplied for submission must be a valid e-mail address and no more than 25 concurrent jobs should be submitted at any one time, see http://www.ebi.ac.uk/Tools/webservices/about/webservices and the EMBL-EBI Terms of Use: http://www.ebi.ac.uk/Information/termsofuse.html

Contact info: Info
by EMBL-EBI Support (over 3 years ago)
How to cite this service: Info
No info yet
Publications about this service: Info
by EMBL-EBI Support (over 2 years ago)

Goujon M., McWilliam H., Li W., Valentin F., Squizzato S., Paern J. and Lopez R. (2010) “A new bioinformatics analysis tools framework at EMBL-EBI.” Nucleic Acids Res. 38:W695-9 PMID: 20439314 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=20439314&dataSource=MED) DOI: 10.1093/nar/gkq313 (http://dx.doi.org/10.1093/nar/gkq313)

by EMBL-EBI Support (over 2 years ago)

Pearson W.R. and Lipman D.J. (1988) “Improved tools for biological sequence comparison.” Proc. Natl. Acad. Sci. U.S.A. 85(8):2444-8. PMID: 3162770 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=3162770&dataSource=MED) DOI: 10.1073/pnas.85.8.2444 (http://dx.doi.org/10.1073/pnas.85.8.2444)

Citations of this service: Info
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Info Members Responsible for this Service (1)

Info Favourited By (0)

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