European Bioinformatics Institute (EBI)
Submitter / Source:
Hamish McWilliam (about 1 year ago)
http://www.ebi.ac.uk/Tools/services/soap/muscle?wsdl(download last cached WSDL file)
Documentation URL(s): Hamish McWilliam (about 1 year ago)http://www.ebi.ac.uk/Tools/webservices/services/msa/muscle_soap
Login to add a documentation URL Description(s): Hamish McWilliam (about 1 year ago)MUSCLE (MUltiple Sequence Comparison by Log-Expectation) is claimed to achieve both better average accuracy and better speed than ClustalW or T-Coffee, depending on the chosen options. Multiple alignments of protein sequences are important in many applications, including phylogenetic tree estimation, secondary structure prediction and critical residue identification.
Login to add license info Cost: Hamish McWilliam (11 months ago)Free.
Login to add usage conditions info Contact Info: Hamish McWilliam (11 months ago)EMBL-EBI Support: http://www.ebi.ac.uk/support/index.php?query=WebServices
Login to add contact info Publications: for this service. This can be a URI to the publication and/or a DOI. Hamish McWilliam (3 days ago)Goujon M., McWilliam H., Li W., Valentin F., Squizzato S., Paern J. and Lopez R. (2010)
“A new bioinformatics analysis tools framework at EMBL-EBI.”
Nucleic Acids Res. 38:W695-9
PMID: 20439314 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=20439314&dataSource;=MED)
DOI: 10.1093/nar/gkq313 (http://dx.doi.org/10.1093/nar/gkq313)
Hamish McWilliam (3 days ago)Edgar R.C. (2004)
“MUSCLE: multiple sequence alignment with high accuracy and high throughput.”
Nucleic Acids Res. 32(5):1792-7.
PMID: 15034147 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=15034147&dataSource;=MED)
DOI: 10.1093/nar/gkh340 (http://dx.doi.org/10.1093/nar/gkh340)