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Icon  European Bioinformatics Institute (EMBL-EBI)

United Kingdom Gb

Hamish McWilliamGb (almost 5 years ago)

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http://www.ebi.ac.uk/Tools/services/soap/muscle?wsdl (download last cached WSDL file)

by EMBL-EBI Support (over 2 years ago)

MUSCLE (MUltiple Sequence Comparison by Log-Expectation) 1) is claimed to achieve both better average accuracy and better speed than ClustalW or T-Coffee, depending on the chosen options. Multiple alignments of protein sequences are important in many applications, including phylogenetic tree estimation, secondary structure prediction and critical residue identification.

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by EMBL-EBI Support (over 2 years ago)
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by EMBL-EBI Support (over 2 years ago)


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by EMBL-EBI Support (over 2 years ago)

E-mail supplied for submission must be a valid e-mail address and no more than 25 concurrent jobs should be submitted at any one time, see http://www.ebi.ac.uk/Tools/webservices/about/webservices and the EMBL-EBI Terms of Use: http://www.ebi.ac.uk/Information/termsofuse.html

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Publications about this service: Info
by EMBL-EBI Support (over 2 years ago)

Goujon M., McWilliam H., Li W., Valentin F., Squizzato S., Paern J. and Lopez R. (2010) “A new bioinformatics analysis tools framework at EMBL-EBI.” Nucleic Acids Res. 38:W695-9 PMID: 20439314 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=20439314&dataSource=MED) DOI: 10.1093/nar/gkq313 (http://dx.doi.org/10.1093/nar/gkq313)

by EMBL-EBI Support (over 2 years ago)

Edgar R.C. (2004) “MUSCLE: multiple sequence alignment with high accuracy and high throughput.” Nucleic Acids Res. 32(5):1792-7. PMID: 15034147 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=15034147&dataSource=MED) DOI: 10.1093/nar/gkh340 (http://dx.doi.org/10.1093/nar/gkh340)

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