Web Service T-Coffee (SOAP) SOAP Gb

Specified Name (from WSDL): JDispatcherService |
PASSED
Annotations: 37 Total number of annotations from the provider's definition / description document. 12 Total number of annotations submitted by members of BioCatalogue. 25 Total number of annotations sourced from other registries. 0

Overview

Provider:
European Bioinformatics Institute (EMBL-EBI)

Location:
United Kingdom Gb

Submitter/Source:
Hamish McWilliamGb (almost 9 years ago)

Base URL:
http://www.ebi.ac.uk/Tools/services/soap/tcoffee

WSDL Location:
http://www.ebi.ac.uk/Tools/services/soap/tcoffee?wsdl (download last cached WSDL file)

Description(s):
by EMBL-EBI Support (about 6 years ago)

T-Coffee is a multiple sequence alignment program. Multiple sequence alignment programs are meant to align a set of sequences previously gathered using other programs such as BLAST or FASTA. The main characteristic of T-Coffee is that it will allow you to combine results obtained with several alignment methods. For instance if you have an alignment coming from ClustalW, an other alignment coming from Dialign, and a structural alignment of some of your sequences, T-Coffee will combine all that information and produce a new multiple sequence having the best agreement with all these methods. By default, T-Coffee will compare all your sequences two by two, producing a global alignment and a series of local alignments (using lalign). The program will then combine all these alignments into a multiple alignment.

ELIXIR Description(s): Info
by Michael Cornell Curator(almost 4 years ago)

T-Coffee is a multiple sequence alignment program. Multiple sequence alignment programs are meant to align a set of sequences previously gathered using other programs such as BLAST or FASTA.

License(s): Info
by EMBL-EBI Support (about 6 years ago)
Cost: Info
by EMBL-EBI Support (about 6 years ago)

Free.

Usage conditions: Info
by EMBL-EBI Support (about 6 years ago)

E-mail supplied for submission must be a valid e-mail address and no more than 25 concurrent jobs should be submitted at any one time, see http://www.ebi.ac.uk/Tools/webservices/about/webservices and the EMBL-EBI Terms of Use: http://www.ebi.ac.uk/Information/termsofuse.html

Contact info: Info
by EMBL-EBI Support (about 6 years ago)
by Michael Cornell Curator(almost 4 years ago)
How to cite this service: Info
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Publications about this service: Info
by EMBL-EBI Support (about 6 years ago)

Goujon M., McWilliam H., Li W., Valentin F., Squizzato S., Paern J. and Lopez R. (2010) “A new bioinformatics analysis tools framework at EMBL-EBI.” Nucleic Acids Res. 38:W695-9 PMID: 20439314 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=20439314&dataSource=MED) DOI: 10.1093/nar/gkq313 (http://dx.doi.org/10.1093/nar/gkq313)

by EMBL-EBI Support (about 6 years ago)

Notredame C., Higgins D.G. and Heringa J. (2000) “T-Coffee: A novel method for fast and accurate multiple sequence alignment.” J. Mol. Biol. 302(1):205-17. PMID: 10964570 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=10964570&dataSource=MED) DOI: 10.1006/jmbi.2000.4042 (http://dx.doi.org/10.1006/jmbi.2000.4042)

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