Web Service FASTM (SOAP) SOAP Gb

Specified Name (from WSDL): JDispatcherService |
aka fastf aka fasts aka fastm Add_annotation_inactiveAdd_annotation_inactiveLog in to add alternative_name
PASSED
Annotations: 34 Total number of annotations from the provider's definition / description document. 12 Total number of annotations submitted by members of BioCatalogue. 22 Total number of annotations sourced from other registries. 0

Overview

Provider:
European Bioinformatics Institute (EMBL-EBI)

Location:
UNITED KINGDOM Gb

Submitter/Source:
Hamish McWilliamGb (over 8 years ago)

Base URL:
http://www.ebi.ac.uk/Tools/services/soap/fastm

WSDL Location:
http://www.ebi.ac.uk/Tools/services/soap/fastm?wsdl (download last cached WSDL file)

Description(s):
by EMBL-EBI Support (over 6 years ago)

The FASTA (pronounced FAST-Aye) suite of programs includes three specialist programs for searching databases with a set of sequence fragments, as may be obtained from protein mass spec. or Edman protein sequencing:

  • FASTF - Compares an ordered peptide mixture, as would be obtained by Edman degradation of a CNBr cleavage of a protein, against a protein database.
  • FASTM - Compares an ordered set of peptides to a protein sequence database or an ordered set of oligonucleotides to a nucleotide sequence database.
  • FASTS - Compares a set of short peptide fragments, as would be obtained from mass-spec. analysis of a protein, against a protein database.
ELIXIR Description(s): Info
by Michael Cornell Curator(about 4 years ago)

The FASTA (pronounced FAST-Aye) suite of programs includes three specialist programs for searching databases with a set of sequence fragments, as may be obtained from protein mass spec. or Edman protein sequencing:

FASTF - Compares an ordered peptide mixture, as would be obtained by Edman degradation of a CNBr cleavage of a protein, against a protein database. FASTM - Compares an ordered set of peptides to a protein sequence database or an ordered set of oligonucleotides to a nucleotide sequence database. FASTS - Compares a set of short peptide fragments, as would be obtained from mass-spec. analysis of a protein, against a protein database.

License(s): Info
by EMBL-EBI Support (over 6 years ago)
Cost: Info
by EMBL-EBI Support (over 6 years ago)

Free.

Usage conditions: Info
by EMBL-EBI Support (over 6 years ago)

E-mail supplied for submission must be a valid e-mail address and no more than 25 concurrent jobs should be submitted at any one time, see http://www.ebi.ac.uk/Tools/webservices/about/webservices and the EMBL-EBI Terms of Use: http://www.ebi.ac.uk/Information/termsofuse.html

Contact info: Info
by EMBL-EBI Support (over 6 years ago)
by Michael Cornell Curator(about 4 years ago)
How to cite this service: Info
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Publications about this service: Info
by EMBL-EBI Support (over 6 years ago)

Goujon M., McWilliam H., Li W., Valentin F., Squizzato S., Paern J. and Lopez R. (2010) “A new bioinformatics analysis tools framework at EMBL-EBI.” Nucleic Acids Res. 38:W695-9 PMID: 20439314 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=20439314&dataSource=MED) DOI: 10.1093/nar/gkq313 (http://dx.doi.org/10.1093/nar/gkq313)

by EMBL-EBI Support (over 6 years ago)

Mackey A.J., Haystead T.A. and Pearson W.R. (2002) “Getting more from less: algorithms for rapid protein identification with multiple short peptide sequences.” Mol. Cell Proteomics 1(2):139-47. PMID: 12096132 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=12096132&dataSource=MED) DOI: 10.1074/mcp.M100004-MCP200 (http://dx.doi.org/10.1074/mcp.M100004-MCP200)

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