vrnaalifold SOAPSoaplab

Cog_error Archived / Deprecated

This service has been archived because it may not be active anymore (or is close to being non active). Please do not use it as it may not be accessible.

Specified Name (from WSDL): AnalysisServiceService |

No alternative names Add_annotation_inactive

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Overview

This looks like a Soaplab service. Click here for more info and guidance on how to use this service

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Provider:
European Bioinformatics Institute (EMBL-EBI)

Location:
UNITED KINGDOM

Submitter/Source:
Mike Mayer (over 9 years ago)

Base URL:
http://www.ebi.ac.uk/soaplab/services/nucleic_2d_structure.vrnaalifold

WSDL Location:
http://www.ebi.ac.uk/soaplab/services/nucleic_2d_structure.vrnaalifold?wsdl (download last cached WSDL file)

Documentation URL(s):

None

Description(s):

No description(s) yet

ELIXIR Description(s): Info

No info yet

Details (from Soaplab server):

from

header=[] body=[Provider's description doc] cssheader=[boxoverTooltipHeader] cssbody=[boxoverTooltipBody] delay=[200]

Soaplab server (over 8 years ago)

ds_lsr_analysis :

analysis :

name : vrnaalifold
output :
installation : Soaplab2 default installation
version : 6.3.0
type : Nucleic RNA folding, Nucleic 2D structure
description : RNA alignment folding
analysis_extension :

input :

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ds_lsr_analysis :

analysis :

name : vrnaalifold
output :
installation : Soaplab2 default installation
version : 6.3.0
type : Nucleic RNA folding, Nucleic 2D structure
description : RNA alignment folding
analysis_extension :

parameter :
- data :
- base :
- data :
- base :
- data :
- base :
- data :
- base :
- range :
- base :
- base :
- base :
- base :
- base :
- standard :
- base :
- base :
- base :
- base :
- standard :
- base :
- range :
- base :
- standard :
- base :
- range :
- base :
- range :
- base :
- base :
- base :
- data :
- base :
- data :
- base :
option :
- name : emboss
- type : normal
- value : true
- name : installation
- type : normal
- value : Soaplab2 default installation
- name : version
- type : normal
- value : 6.3.0
app_info :

category : nucleic_rna_folding
help_url : http://emboss.sourceforge.net/apps/release/6.3/emboss/apps/vrnaalifold.html

event :

action :
id : _E_1

input :
- name : temperature
- default : 37.0
- mandatory : false
- type : float
- name : gu
- default : false
- mandatory : false
- type : boolean
- name : closegu
- default : false
- mandatory : false
- type : boolean
- name : lp
- default : false
- mandatory : false
- type : boolean
- name : convert
- default : false
- mandatory : false
- type : boolean
- name : tetraloop
- default : false
- mandatory : false
- type : boolean
- name : circular
- default : false
- mandatory : false
- type : boolean
- name : colour
- default : false
- mandatory : false
- type : boolean
- name : scale
- default : 1.07
- mandatory : false
- type : float
- name : covariance
- default : 1.0
- mandatory : false
- type : float
- name : nspenalty
- default : 1.0
- mandatory : false
- type : float
- name : endgaps
- default : false
- mandatory : false
- type : boolean
- name : most
- default : false
- mandatory : false
- type : boolean