Web Service PSI-BLAST (REST) REST Gb

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PASSED
Annotations: 21 Total number of annotations from the provider's definition / description document. 0 Total number of annotations submitted by members of BioCatalogue. 21 Total number of annotations sourced from other registries. 0

Overview

Provider:
European Bioinformatics Institute (EMBL-EBI)

Location:
UNITED KINGDOM Gb

Submitter/Source:
EMBL-EBI SupportGb (almost 8 years ago)

Base URL:
http://www.ebi.ac.uk/Tools/services/rest/psiblast

Description(s):
by EMBL-EBI Support (almost 8 years ago)

Position Specific Iterative BLAST (PSI-BLAST) refers to a feature of NCBI BLAST 2.0 in which a position-specific scoring matrix (PSSM) profile is constructed from set of BLAST alignments. The PSSM is then used to search the database in subsequent iteratio

ELIXIR Description(s): Info
by Michael Cornell Curator(over 4 years ago)

Position Specific Iterative BLAST (PSI-BLAST) refers to a feature of NCBI BLAST 2.0 in which a position-specific scoring matrix (PSSM) profile is constructed from set of BLAST alignments.

License(s): Info
by EMBL-EBI Support (almost 8 years ago)
Cost: Info
by EMBL-EBI Support (almost 8 years ago)

Free.

Usage conditions: Info
by EMBL-EBI Support (almost 8 years ago)

E-mail supplied for submission must be a valid e-mail address and no more than 25 concurrent jobs should be submitted at any one time, see http://www.ebi.ac.uk/Tools/webservices/about/webservices and the EMBL-EBI Terms of Use: http://www.ebi.ac.uk/Informa

Contact info: Info
by EMBL-EBI Support (almost 8 years ago)
by Michael Cornell Curator(over 4 years ago)
How to cite this service: Info
No info yet
Publications about this service: Info
by EMBL-EBI Support (almost 8 years ago)

Goujon M., McWilliam H., Li W., Valentin F., Squizzato S., Paern J. and Lopez R. (2010) “A new bioinformatics analysis tools framework at EMBL-EBI.” Nucleic Acids Res. 38:W695-9 PMID: 20439314 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId

by EMBL-EBI Support (almost 8 years ago)

Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W. and Lipman D.J. (1997) “Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.” Nucleic Acids Res. 25(17):3389-402. PMID: 9254694 (http://www.ebi.ac.uk/cit

Citations of this service: Info
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Example workflows using this service: Info
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