PROSITE Scan (SOAP) SOAP

Scan the PROSITE (http://prosite.expasy.org/) database of protein profiles and patterns with a protein sequence.

Scan the PROSITE database of protein profiles and patterns with a protein sequence.

This service does not require a license but should be used according to EMBL-EBI’s policies http://www.ebi.ac.uk/about/terms-of-use

Free.

E-mail supplied for submission must be a valid e-mail address and no more than 30 concurrent jobs should be submitted at any one time, see http://www.ebi.ac.uk/Tools/webservices/ and the EMBL-EBI Terms of Use: http://www.ebi.ac.uk/about/terms-of-use

EMBL-EBI support: http://www.ebi.ac.uk/support/WebServices

Goujon M., McWilliam H., Li W., Valentin F., Squizzato S., Paern J. and Lopez R. (2010) “A new bioinformatics analysis tools framework at EMBL-EBI.” Nucleic Acids Res. 38:W695-9 PMID: 20439314 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=20439314&dataSource=MED) DOI: 10.1093/nar/gkq313 (http://dx.doi.org/10.1093/nar/gkq313)

Gattiker A, Gasteiger E and Bairoch A (2002) “ScanProsite: a reference implementation of a PROSITE scanning tool.” Applied Bioinformatics 1(2):107-108. PubMed: 15130850 (http://europepmc.org/abstract/MED/15130850)

De Castro E, Sigrist CJA, Gattiker A, Bulliard V, Langendijk-Genevaux PS, Gasteiger E, Bairoch A, Hulo N. (2006) “ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins.” Nucleic Acids Res. 34(Web Server issue):W362-5. PubMed: 16845026 (http://europepmc.org/abstract/MED/16845026) DOI: 10.1093/nar/gkl124 (http://dx.doi.org/10.1093/nar/gkl124)

McWilliam H., Li W., Uludag M., Squizzato S., Park Y.M., Buso N., Cowley A.P. and Lopez R. (2013) “Analysis Tool Web Services from the EMBL-EBI” Nucleic Acids Res. 41(Web Server issue):W597-600 PMID: 23671338 (http://europepmc.org/abstract/MED/23671338) DOI: 10.1093/nar/gkt376