Web Service MapMi (SOAP) SOAP Gb

Specified Name (from WSDL): JDispatcherService |
PASSED
Annotations: 31 Total number of annotations from the provider's definition / description document. 12 Total number of annotations submitted by members of BioCatalogue. 19 Total number of annotations sourced from other registries. 0

Overview

Provider:
European Bioinformatics Institute (EMBL-EBI)

Location:
United Kingdom Gb

Submitter/Source:
Michael CornellGbCurator (over 4 years ago)

Base URL:
http://www.ebi.ac.uk/Tools/services/soap/mapmi

WSDL Location:
http://www.ebi.ac.uk/Tools/services/soap/mapmi?wsdl (download last cached WSDL file)

Description(s):
by Michael Cornell Curator(over 4 years ago)

MapMi is a tool for mapping and analysis of miRNA sequences. It is designed to locate miRNA precursor sequences in existing genomic sequences (e.g Ensembl and Ensembl Metazoa), using potential mature miRNA sequences as input. After searching the genome for the provided mature sequences, these hits are extended and classified taking into account major structural properties of known miRNA precursors.

ELIXIR Description(s): Info
by Michael Cornell Curator(over 3 years ago)

MapMi is a tool for mapping and analysis of miRNA sequences. It is designed to locate miRNA precursor sequences in existing genomic sequences (e.g Ensembl and Ensembl Metazoa), using potential mature miRNA sequences as input. After searching the genome for the provided mature sequences, these hits are extended and classified taking into account major structural properties of known miRNA precursors.

License(s): Info
by EMBL-EBI Support (over 4 years ago)

This service does not require a license but should be used according to EMBL-EBI’s policies http://www.ebi.ac.uk/about/terms-of-use

Cost: Info
by EMBL-EBI Support (over 4 years ago)

Free.

Usage conditions: Info
by EMBL-EBI Support (over 4 years ago)

E-mail supplied for submission must be a valid e-mail address and no more than 30 concurrent jobs should be submitted at any one time, see http://www.ebi.ac.uk/Tools/webservices/ and the EMBL-EBI Terms of Use: http://www.ebi.ac.uk/about/terms-of-use

Contact info: Info
by EMBL-EBI Support (over 4 years ago)
How to cite this service: Info
No info yet
Publications about this service: Info
by EMBL-EBI Support (over 4 years ago)

Guerra-Assunção J.A. and Enright A.J. (2010) “MapMi: automated mapping of microRNA loci” BMC Bioinformatics 11:133 PMID: 20233390 (http://europepmc.org/abstract/MED/20233390) DOI: 10.1186/1471-2105-11-133

by EMBL-EBI Support (over 4 years ago)

McWilliam H., Li W., Uludag M., Squizzato S., Park Y.M., Buso N., Cowley A.P. and Lopez R. (2013) “Analysis Tool Web Services from the EMBL-EBI” Nucleic Acids Res. 41(Web Server issue):W597-600 PMID: 23671338 (http://europepmc.org/abstract/MED/23671338) DOI: 10.1093/nar/gkt376

by EMBL-EBI Support (over 4 years ago)

Goujon M., McWilliam H., Li W., Valentin F., Squizzato S., Paern J. and Lopez R (2010) “A new bioinformatics analysis tools framework at EMBL-EBI” Nucleic Acids Res. 38(Web Server issue):W695-9 PMID: 20439314 (http://europepmc.org/abstract/MED/20439314) DOI: 10.1093/nar/gkq313

Citations of this service: Info
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Info Members Responsible for this Service (2)

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