Web Service MSAprobsWS SOAP Gb

aka MSAProbs - Parallel and accurate multiple sequence alignment Add_annotation_inactiveAdd_annotation_inactiveLog in to add alternative_name
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United Kingdom Gb

Michael CornellGbCurator (over 6 years ago)

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by Michael Cornell Curator(over 6 years ago)

MSAProbs is a new and practical multiple alignment algorithm for protein sequences. The design of MSAProbs is based on a combination of pair hidden Markov models and partition functions to calculate posterior probabilities. Assessed using the popular benchmarks: BAliBASE, PREFAB, SABmark and OXBENCH, MSAProbs achieves statistically significant accuracy improvements over the existing top performing aligners, including ClustalW, MAFFT, MUSCLE, ProbCons and Probalign. Furthermore, MSAProbs is optimized for multi-core CPUs by employing a multi-threaded design, leading to a competitive execution time compared to other aligners.

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by Michael Cornell Curator(over 5 years ago)

MSAProbs is a multiple alignment algorithm for protein sequences.

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