Web Service MSAprobsWS SOAP Gb

aka MSAProbs - Parallel and accurate multiple sequence alignment Add_annotation_inactiveAdd_annotation_inactiveLog in to add alternative_name
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Annotations: 40 Total number of annotations from the provider's definition / description document. 33 Total number of annotations submitted by members of BioCatalogue. 7 Total number of annotations sourced from other registries. 0

Overview

Provider:
www-compbio-dundee-ac-uk

Location:
United Kingdom Gb

Submitter/Source:
Michael CornellGbCurator (over 4 years ago)

Base URL:
http://www.compbio.dundee.ac.uk:80/jabaws/MSAprobsWS

WSDL Location:
http://www.compbio.dundee.ac.uk/jabaws/MSAprobsWS?wsdl (download last cached WSDL file)

Description(s):
by Michael Cornell Curator(over 4 years ago)

MSAProbs is a new and practical multiple alignment algorithm for protein sequences. The design of MSAProbs is based on a combination of pair hidden Markov models and partition functions to calculate posterior probabilities. Assessed using the popular benchmarks: BAliBASE, PREFAB, SABmark and OXBENCH, MSAProbs achieves statistically significant accuracy improvements over the existing top performing aligners, including ClustalW, MAFFT, MUSCLE, ProbCons and Probalign. Furthermore, MSAProbs is optimized for multi-core CPUs by employing a multi-threaded design, leading to a competitive execution time compared to other aligners.

ELIXIR Description(s): Info
by Michael Cornell Curator(almost 4 years ago)

MSAProbs is a multiple alignment algorithm for protein sequences.

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