EB-eye REST

EB-eye is a high-performance, full-featured text search engine using Apache Lucene technology to index EMBL-EBI databases in various formats (e.g. flat-files, XML dumps, OBO format, etc.) and provides very fast access to the EMBL-EBI’s data resources. The system allows the user to search globally across all EMBL-EBI databases.

Search globally across all EMBL-EBI databases.

Free

https://www.ebi.ac.uk/support/ebi-search

Madeira F., Park Y.M., Lee J., Buso N., Gur T., Madhusoodanan N., Basutkar P., Tivey ARN., Potter SC., Finn RD., Lopez R. (2019)
The EMBL-EBI search and sequence analysis tools APIs in 2019..
Nucleic Acids Research published online on April 12, 2019.
Abstract DOI: 10.1093/nar/gkz268 full-text PDF

Park Y.M., Squizzato S., Buso N., Gur T., Lopez R. (2017)
The EBI search engine: EBI search as a service—making biological data accessible for all.
Nucleic Acids Research published online on May 2, 2017. Abstract DOI: 10.1093/nar/gkx359 full-text PDF

Squizzato S., Park Y.M., Buso N., Gur T., Cowley A., Li W., Uludag M., Pundir S., Cham J.A., McWilliam H., Lopez R. (2015) The EBI Search engine: providing search and retrieval functionality for biological data from EMBL-EBI.
Nucleic Acids Research published online on April 8, 2015. Abstract DOI: 10.1093/nar/gkv316 full-text PDF

Valentin F., Squizzato S., Goujon M., McWilliam H., Paern J. and Lopez R. (2010)
Fast and efficient searching of biological data resources using EB-eye.
Briefings in Bioinformatics Advance Access published online on February 11, 2010.
Abstract DOI: 10.1093/bib/bbp065 full-text PDF

Goujon M., Valentin F., Miyar T., McWilliam H. and Lopez, R. (2008)
The EB-eye
EMBnet.news 13.4: 18-21 December 2007.
full-text PDF