Web Service PRANK (SOAP) SOAP Gb

Specified Name (from WSDL): JDispatcherService |
PASSED
Annotations: 31 Total number of annotations from the provider's definition / description document. 12 Total number of annotations submitted by members of BioCatalogue. 19 Total number of annotations sourced from other registries. 0

Overview

Provider:
European Bioinformatics Institute (EMBL-EBI)

Location:
UNITED KINGDOM Gb

Submitter/Source:
Hamish McWilliamGb (almost 8 years ago)

Base URL:
http://www.ebi.ac.uk/Tools/services/soap/prank

WSDL Location:
http://www.ebi.ac.uk/Tools/services/soap/prank?wsdl (download last cached WSDL file)

Description(s):
by EMBL-EBI Support (almost 6 years ago)

PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences. It’s based on a novel algorithm that treats insertions correctly and avoids over-estimation of the number of deletion events. In addition, PRANK borrows ideas from maximum likelihood methods used in phylogenetics and correctly takes into account the evolutionary distances between sequences. Lastly, PRANK allows for defining a potential structure for sequences to be aligned and then, simultaneously with the alignment, predicts the locations of structural units in the sequences.

ELIXIR Description(s): Info
by Michael Cornell Curator(over 3 years ago)

PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences.

License(s): Info
by EMBL-EBI Support (almost 6 years ago)
Cost: Info
by EMBL-EBI Support (almost 6 years ago)

Free.

Usage conditions: Info
by EMBL-EBI Support (almost 6 years ago)

E-mail supplied for submission must be a valid e-mail address and no more than 25 concurrent jobs should be submitted at any one time, see http://www.ebi.ac.uk/Tools/webservices/about/webservices and the EMBL-EBI Terms of Use: http://www.ebi.ac.uk/Information/termsofuse.html

Contact info: Info
by EMBL-EBI Support (almost 6 years ago)
by Michael Cornell Curator(over 3 years ago)
How to cite this service: Info
No info yet
Publications about this service: Info
by EMBL-EBI Support (almost 6 years ago)

Goujon M., McWilliam H., Li W., Valentin F., Squizzato S., Paern J. and Lopez R. (2010) “A new bioinformatics analysis tools framework at EMBL-EBI.” Nucleic Acids Res. 38:W695-9 PMID: 20439314 (http://www.ebi.ac.uk/citexplore/citationDetails.do?externalId=20439314&dataSource=MED) DOI: 10.1093/nar/gkq313 (http://dx.doi.org/10.1093/nar/gkq313)

by EMBL-EBI Support (almost 6 years ago)

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Citations of this service: Info
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